Swiftpack.co - Package - jjlynch2/OsteoSort

#Current development status for 1.2.6

Installation

Requires Rtools to build on Windows

Requires Xcode to build on OSX

To install directly from GitHub use the devtools R package:

install.packages("devtools")

library(devtools)

install_github("jjlynch2/OsteoSort", ref="v1.2.6")

Depends

  • compiler
  • Morpho
  • parallel
  • pixmap
  • jpeg
  • CCA
  • data.table
  • Rcpp
  • RcppParallel
  • car

Changes for OsteoSort version : 1.2.6

Minor changes:

  • Updated imports for DESC
  • Adusted default scale option for 2D outline extraction

Moderate changes:

  • Added Boxcox transformation for t-tests
  • Added dependency on car
  • Added option to select number of Principal Components for regression analysis in reg.multitest()
  • Added option (default) to select number of Principal Components based on cumulative variance

Major changes:

  • Added input.3d() and match.3d() functions for importing and pair-matching 3D data respectively
  • Added rotation(), translation(), and mean_shape() functions

Bug fixes:

  • Fixed bug with prediction interval lines for simple regression

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Dependencies

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Releases

v1.2.6 - Jul 15, 2018

#Current development status for 1.2.6

Installation

Requires Rtools to build on Windows

Requires Xcode to build on OSX

To install directly from GitHub use the devtools R package:

install.packages("devtools")

library(devtools)

install_github("jjlynch2/OsteoSort", ref="v1.2.6")

Depends

  • compiler
  • Morpho
  • parallel
  • pixmap
  • jpeg
  • CCA
  • data.table
  • Rcpp
  • RcppParallel
  • car

Changes for OsteoSort version : 1.2.6

Minor changes:

  • Updated imports for DESC
  • Adusted default scale option for 2D outline extraction

Moderate changes:

  • Added Boxcox transformation for t-tests
  • Added dependency on car
  • Added option to select number of Principal Components for regression analysis in reg.multitest()
  • Added option (default) to select number of Principal Components based on cumulative variance

Major changes:

  • Added input.3d() and match.3d() functions for importing and pair-matching 3D data respectively
  • Added rotation(), translation(), and mean_shape() functions

Bug fixes:

  • Fixed bug with prediction interval lines for simple regression

v1.2.6rc1 - Jul 8, 2018

Changes for OsteoSort version : 1.2.6rc1

Minor changes:

Updated imports for DESC

Adusted default scale option for 2D outline extraction

Moderate changes:

Added Boxcox transformation for t-tests

Added dependency on car

Added option to select number of Principal Components for regression analysis in reg.multitest()

Major changes:

Added input.3d() and match.3d() functions for importing and pair-matching 3D data respectively

Added rotation(), translation(), and mean_shape functions

v1.2.5 - Jan 21, 2018

Installation

Requires Rtools to build on Windows

Requires Xcode to build on OSX

To install directly from GitHub use the devtools R package:

require("devtools")

install_github("jjlynch2/OsteoSort", ref = "v1.2.5")

Depends

  • compiler
  • Morpho
  • parallel
  • pixmap
  • jpeg
  • CCA
  • data.table
  • Rcpp
  • RcppParallel

Changes for OsteoSort version : 1.2.5

Minor changes:

  • Added ByteCompile: yes on install
  • Adjusted articulation t-test default options

Moderate changes:

  • Removed plyr as a dependency
  • Adjusted population specific Trotter corrections for antemortem stature strength association

v1.2.4 - Dec 17, 2017

Changes for OsteoSort version : 1.2.4

Minor:

Added example datasets antemortem_data and postmortem_data

Adjusted plots and removed labels

Moderate changes:

Probability values calculated for PCACCA-Regression with options to use alpha level as cut-off

v1.2.3 - Dec 15, 2017

OsteoSort:

A statistical osteological sorting R package for commingled human remains using metric, 2D, and 3D data.

Changes for OsteoSort version : 1.2.3

Minor changes:

Adjusted print messages for start/finish of functions

Moderate changes:

parLapply implemented on Windows to replace Lapply

Bug fixes:

Fixed directory creation if not present for sessiontempdir

Fixed testagainstzero argument mislabeled as testagainst

Fixed measurement argument being NULL

Fixed typo with Fem_17 mislabeled as Fem_18

Fixed typo with Tib_11 mislabeled as Tib_10

Fixed Factors being introduced by forcing stringsAsFactors = FALSE within each function excplicity. Value returns to TRUE when complete This solves the memory issue assocaited with articulation and association.